diff -up matio-1.3.3/configure.fortranpath2 matio-1.3.3/configure
--- matio-1.3.3/configure.fortranpath2	2008-06-02 18:54:54.000000000 +0200
+++ matio-1.3.3/configure	2008-10-13 12:10:03.000000000 +0200
@@ -4563,7 +4563,7 @@ ac_compile='$CC -c $CFLAGS $CPPFLAGS con
 ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
 ac_compiler_gnu=$ac_cv_c_compiler_gnu
 
-    ac_config_files="$ac_config_files src/fortran/matio_t.inc"
+    ac_config_files="$ac_config_files src/matio_t.inc"
 
 fi
 
@@ -23748,7 +23748,7 @@ for ac_config_target in $ac_config_targe
 do
   case $ac_config_target in
     "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
-    "src/fortran/matio_t.inc") CONFIG_FILES="$CONFIG_FILES src/fortran/matio_t.inc" ;;
+    "src/matio_t.inc") CONFIG_FILES="$CONFIG_FILES src/fortran/matio_t.inc" ;;
     "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
     "src/matioConfig.h") CONFIG_HEADERS="$CONFIG_HEADERS src/matioConfig.h" ;;
     "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
diff -up matio-1.3.3/configure.ac.fortranpath2 matio-1.3.3/configure.ac
--- matio-1.3.3/configure.ac.fortranpath2	2008-06-02 18:54:45.000000000 +0200
+++ matio-1.3.3/configure.ac	2008-10-13 12:10:03.000000000 +0200
@@ -38,7 +38,7 @@ if test "$enable_fortran" = "yes"
 then
     AC_PROG_FC([pgf95 pgf90 ifort gfortran g95])
     AC_FC_WRAPPERS
-    AC_CONFIG_FILES([src/fortran/matio_t.inc])
+    AC_CONFIG_FILES([src/matio_t.inc])
 fi
 
 dnl